Have a read up on the top mount Intercooler by ATS Racing - much better cooling when air doesn’t travel in pipes / Intercooler next to the manifold and dump pipe, plus a better/bigger core (about twice the size) with shorter pipe run.
You can also get an eBay special (mustang A Intercooler) just need a local shop to wield some stay brackets. There are other eBay A core Intercooler that will better serve than mr2 side mount at a similar price. Measure up and see what works before buying (more info online).
Question is, as doing a 3sgte head/5sgte wanting to mounting alternator where caldina top position - sourcing a caldina alternator bracket. Did you have to modify the alternator bracket/engine mount drivers side or did it all bolt up?