ok mixed feelings atm - picked the car up, and it was showing 11.8v with the car running on the controller... definitely not the 13.8+ i was expecting! :\ the guys at the garage reckon the battery is fu-barred, but i had a second battery in parallel with this and still got the same voltage +/- 1v there was no distinct voltage difference between car on and car off... not sure if this could be a battery problem or not!.
I've got a spare battery, so will try that bat instead, and charging my existing one now, but i honestly think there is another issue somewhere in the charging circuit! /cry!
at least i have a re-co'ed alternator - so that's something :)