Firstly, I don't know what may be causing your problem, however the turbo and NA Prop valves are different in their operation. Google up 'Brake bias Knee Point'
The M/C bore size will mainly only affect pedal pressure needed, and pedal travel.
Your system looks like a bit of a mixture.
As well as a later model turbo prop valve, maybe look at also updating the booster. The post '94 ones are probably the best ones to get and are a lot more powerful than the early model NA ones. You would also need a separate check valve. Your one inch master may still be OK even though 15/16" is the OEM size.