Dudeman
Actually, my n/a only needed wheel bearings replaced and one battery during the eight or so years I had it. On the other hand my turbo, whilst reliable, asked for and received quite a bit more.
Wish I'd had your luck with my last SW20, man. I probably spent an easy 20k (I try not to think about it) on mine in the 2 years I owned it. That said, after I did the engine swap, I had no problems from it, and it went hard, and still does today!
Alternatively, my new SW, which is a Gen 2 turbo, has spend about 5 of the 10 months I've owned it off of the road due to a shortage of cash, and a large list of replacement parts needed.
I can also speak from experience, having been heavily involved in the AT to MT swap EssDub is doing (still in progress), that doing auto to manual swap is the single biggest PITA job I've done on an MR2. And the weekend before, we chucked a whole new engine in a different car in a matter of hours.
Seriously, the SMT to MT swaps in Spyders is less of a pain, imo.
My opinion could be jaded because of the specific car we're doing this swap to, but it has definitely been a less-than-enjoyable project.
If you want my opinion, I'd drive the auto while you're able, then sell it on and buy another manual one. If you keep an eye out, you'll find a good deal on an excellent car. Look into getting a Bathurst if you want a manual N/A. They're light, fairly cheap these days, and have a truly excellent engine.
Run that into the ground, then maybe look into doing a 2GR swap. Following Eric or Steve's (B24) builds has shown that it's a very slow process that will make your wallet hate you.
But that's just my 2 cents, of course. Hope it helped in some way or other :)